PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G375700.1
Common NameB456_009G375700, LOC105766437
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 177aa    MW: 19225.3 Da    PI: 9.1498
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G375700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-202272256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+taeeAa+a++a +++++g+
  Gorai.009G375700.1 22 RYRGVRKRP-WGRYAAEIRDPRK---KTRVWLGTFDTAEEAARAYDAKAREFRGA 72
                        59*******.**********843...6*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.7092279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-312280IPR001471AP2/ERF domain
CDDcd000181.52E-302281No hitNo description
PfamPF008471.1E-132271IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-222281IPR016177DNA-binding domain
SMARTSM003803.8E-342285IPR001471AP2/ERF domain
PRINTSPR003677.2E-122334IPR001471AP2/ERF domain
PRINTSPR003677.2E-124561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAPRSKPSPI SPNPDPNSKE IRYRGVRKRP WGRYAAEIRD PRKKTRVWLG TFDTAEEAAR  60
AYDAKAREFR GAKAKTNFAD NNANDFTRSP SQSSTVESSS PPPLDLTLAS PCSSLPVTAQ  120
RPVYFFDAFA TGGSGCPASG FAQSDSDSSS SVVDFEGGVR RRVFDLDLNQ LPAEMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-181878162ATERF1
3gcc_A1e-181878162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7793390.0AY779339.1 Gossypium hirsutum AP2/EREBP transcription factor ERF-1 mRNA, complete cds.
GenBankKP7801990.0KP780199.1 Gossypium hirsutum C-repeat binding factor 16 (CBF16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441361.11e-125PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotO803401e-45ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLA0A0D2TYE61e-125A0A0D2TYE6_G
TrEMBLQ5U8L51e-125Q5U8L5_G
STRINGGLYMA06G35710.14e-49(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-24ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]